Analysis

Spike-Train Communities Toolbox (MATLAB)

A MATLAB toolbox containing code for spike-train "community detection" algorithms, based on the ideas in Humphries, M. D. (2011) J Neurosci.

Download the latest version from GitHub.

Change log:

New in version 2: consensus clustering for community detection; added example clustering of 3 real recordings from the Aplysia locomotion system. Moved to GitHub.

New in version 1.2: bug fixes to rectified correlation coefficient options; now used as default over cosine similarity

New in version 1.1: allows user specification of group colours when plotting; allows return of similarity matrices without running whole algorithm; bug fixes to overlapping discrete bins.

Version 1: toolbox at time of publication of Humphries (2011) J Neurosci

Neural Ensemble Analysis Toolbox (MATLAB)

A MATLAB toolbox containing code for analysis of neural ensembles. Includes code to characterise the firing rate and regularity of each ensemble, and each neuron in each ensemble; and code to automatically cluster ensembles into statistically similar groups, based on the "fit-space" idea.

Download the latest version from GitHub.